BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB014G04LP1|AL426730
(795 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1349 687 0.0
>3x_Contig1349
Length = 5890
Score = 687 bits (342), Expect = 0.0
Identities = 390/404 (96%), Gaps = 5/404 (1%)
Strand = Plus / Plus
Query: 1 gatcggtgttcaaaactaatctgtttcccatcttttctgcacggttcacgtctaatgcga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 gatcggtgttcaaaactaatctgtttcccatcttttctgcacggttcacgtctaatgcga 926
Query: 61 scattttcaacgcaaaagtgatcgcatttattggcatattccccaccaagagtgcccagt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 927 gcattttcaacgcaaaagtgatcgcatttattggcatattccccaccaagagttcccagt 986
Query: 121 tgaaacaagcatattcgtcacgtggaatgatatttcacaaacycgtctaagaacgtgtaa 180
|||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||
Sbjct: 987 tgaaacaagcatattcgtca-gtggaatgatatttcacaaactcgtctaagaa-gtgtaa 1044
Query: 181 agatgtctggaaccaaattattggttaaattctcgaaattgtacactaacggcgtttgct 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1045 agatg-ctggaaccaaattattggttaaattctcgaaattgtacactaacggcgtttgct 1103
Query: 241 gtytcatttggtcttggcactgacagatccagattcccmsagttgttctatatcgtttgt 300
|| |||||||||||| |||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 1104 gtttcatttggtctt-gcactgacagatccagattcccagagttgttcaatatcgtttgt 1162
Query: 301 attacattgtaatctttaccatatccactttccacgattgggtccytacaaaggctgata 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1163 attacattgtaatctttaccatatccactttccacgattgggtccttacaaaggctgata 1222
Query: 361 tcctgtttcaatmatttcctatcatggagacgttggaatcgatg 404
|||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 1223 tcctgtttcaataatttcctatcatggaga-gttggaatcgatg 1265
Score = 592 bits (295), Expect = e-169
Identities = 334/347 (96%), Gaps = 4/347 (1%)
Strand = Plus / Plus
Query: 450 tctatctgctaacgtattcagcatgtacattgcccmatggrtaaacttcacctgatgtag 509
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 1300 tctatctgctaacgtattcagcatgtacattgcccaatggataaacttcacctgatgtag 1359
Query: 510 cgataatttgtacgtagtgagatgattgtttaaggaaagacgcacttcccatgcaacata 569
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1360 cgataatttgtacgtagtgagatgattgtttaaggaaaga-gcacttcccatgcaacata 1418
Query: 570 cgtgcmaatccacaattctctcctttatcgccaccamatgagcgcttcttttgacaaagc 629
||||| |||||||||||||||||||||| ||||||| |||||| ||||||||||||||||
Sbjct: 1419 cgtgcaaatccacaattctctcctttat-gccaccaaatgagcccttcttttgacaaagc 1477
Query: 630 tcatttaacaagagcacgamtctgtagtttgcrttaatgtagcatagggacggattcaac 689
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 1478 tcatttaacaagagcacgaatctgtagtttgcattaatgtagcatagggacggattcaac 1537
Query: 690 gtaccgyttattcacttccactggtaatgaagtgtcgaactcatcaagtttgattagagg 749
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1538 gtaccgtttatt-acttccactggtaatgaagtgtcgaactcatcaagtttgattagagg 1596
Query: 750 agccaagttattgtgt-amgatgtcatggtatccaactgaaatatct 795
|||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 1597 agccaagttattgtgtaacgatgtcatggtatccaactgaaatatct 1643
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.39 0.713 1.32
Gapped
Lambda K H
1.39 0.713 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4020
Number of Sequences: 1807
Number of extensions: 4020
Number of successful extensions: 74
Number of sequences better than 1.0e-20: 1
length of query: 795
length of database: 10,358,551
effective HSP length: 16
effective length of query: 779
effective length of database: 10,329,639
effective search space: 8046788781
effective search space used: 8046788781
T: 0
A: 40
X1: 5 (10.0 bits)
X2: 14 (28.1 bits)
S1: 12 (24.6 bits)
S2: 50 (100.9 bits)